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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
44
neural progenitor cell
32
hematopoietic multipotent progenitor cell
18
adipocyte
12
embryonic stem cell
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
mesenchymal stem cell
6
cardiomyocytes (cardiac muscle cell)
6
dendritic cell
6
endodermal cell
6
muscle cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
bipolar neuron
5
chondrocyte
5
mesendoderm
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
cardiac muscle cell
4
olfactory neurosphere cell line
4
smooth muscle cell
4
trophoblast cell
3
cardiac mesoderm primordium
3
cardiac precursors (cardiac muscle cell)
3
ectodermal cell
3
hepatocyte
3
hepatocyte(AFP)
3
islet precursor cell
3
mesodermal cell
3
neural cell
3
neuron
3
pancreatic ductal cell
2
B cell
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
2
excitatory neuron
2
hippocampal neuron
2
lower motor neuron
2
lymphocyte of B lineage (iPSC)
2
neuronal stem cell
1
Adipose SGBS cell line (adipocyte)
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell
1
erythroid cell
1
foreskin keratinocyte
1
foreskin melanocyte
1
iPS DF 4.7 Cell Line
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mammary gland epithelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
myotube
1
natural killer cell
1
neuron cell of Hypothalamus (neuron)
1
renal cell carcinoma
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
Life stage
3
adult
Date released
3
September, 2022
February, 2021
1
June, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR044VBZ
released
Annotation file set
: Candidate regulatory elements for BSS00112 bipolar neuron from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184UDS
released
Annotation file set
: Target gene predictions for BSS00112 bipolar neuron from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610PTO
released
Annotation file set
: Chromatin states for BSS00112 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR109CTD
released
Annotation file set
: enhancer-gene predicton of bipolar_neuron_from_iPSC-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR320JCV
released
Annotation file set
: Accessible chromatin annotation for Neural Bipolar spindle neurons from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP