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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
3
target gene predictions
2
variant allelic effects
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
13
common myeloid progenitor, CD34-positive
9
CD4-positive, alpha-beta memory T cell
8
B cell
8
mature neutrophil
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
mononuclear cell
6
endothelial cell of hepatic sinusoid
6
fibroblast of lung
5
CD14-positive, CD16-negative classical monocyte
5
foreskin fibroblast
5
mammary epithelial cell
5
skeletal muscle myoblast
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
bronchial epithelial cell
4
erythroblast
4
fibroblast of dermis
4
foreskin keratinocyte
4
keratinocyte
4
mammary gland epithelial cell
4
osteoblast
4
regulatory T cell
4
trophoblast cell
3
CD4-positive, alpha-beta T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
inflammatory macrophage
3
naive T cell
3
natural killer cell
3
neurosphere
3
retinal pigment epithelial cell
2
CD1c-positive myeloid dendritic cell
2
aortic adventitial fibroblast
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
fibroblast of breast
2
hepatocyte
2
kidney tubule cell
2
mononuclear cell of bone marrow
2
myoepithelial cell of mammary gland
2
myotube
2
neutrophil
2
peripheral blood-derived erythroblast
2
pulmonary artery endothelial cell
2
renal epithelial cell
2
skeletal muscle satellite cell
2
skin fibroblast
2
tracheal epithelial cell
1
Adipose stromal cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD8-positive, alpha-beta T cell
1
Ishikawa
1
Rhabdoid Tumor of the Kidney
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic endothelial cell
1
aortic smooth muscle cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle myoblast
1
chronic lymphocytic leukemia cell
1
colorectal cancer
1
columnar chondrocyte
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
erythroid cell
1
erythroid progenitor cell
1
fibroblast
1
fibroblast of gingiva
1
fibroblast of peridontal ligament
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
foreskin melanocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
head and neck squamous cell carcinoma
1
hepatic stellate cell
1
induced T-regulatory cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary stem cell
1
mast cell
1
mature eosinophil
1
mesenchymal stem cell
1
meso-epithelial cell
1
monocyte
1
myofibroblast cell
1
neoplastic cell
1
neuronal stem cell
1
non-pigmented ciliary epithelial cell
1
pancreatic ductal cell
1
pericyte cell
1
peripheral blood mononuclear cell
1
peripheral blood stem cell
1
plasma cell
1
pre-B acute lymphoblastic leukemia cell
1
preadipocyte
1
primordial germ cell
1
prostate gland cancer cell
1
pulmonary interstitial fibroblast
1
regular cardiac myocyte
1
renal cortical epithelial cell
1
renal proximal tubule cell
1
skeletal muscle cell
1
small cell ovarian carcinoma cell
1
smooth muscle cell of the brain vasculature
1
somatic muscle myotube
1
stromal cell of bone marrow
Organ
2
epithelium
2
liver
Life stage
1
unknown
Date released
1
February, 2021
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR607QDA
released
Annotation file set
: Chromatin states for BSS00554 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR687WXO
released
Annotation file set
: Binding sites annotation for Liver Hepatocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP