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Annotation type
4
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
Annotation type Category
1
pCHi-C
1
scRNA-seq
Available data
1
bed bed3+
1
tsv
1
txt
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
19
CD14-positive monocyte
17
epithelial cell of proximal tubule
17
monocyte
15
glomerular endothelial cell
14
common myeloid progenitor, CD34-positive
12
B cell
11
regulatory T cell
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell
10
hepatocyte
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
natural killer cell
6
T-helper 2 cell
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
mononuclear cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic acinar cell
5
pancreatic ductal cell
5
trophoblast cell
4
T cell
4
adult endothelial progenitor cell
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
macrophage
4
memory B cell
4
nephron progenitor
4
osteoblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
astrocyte
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mammary gland epithelial cell
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
Kupffer cell
2
T follicular helper cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
alternatively activated macrophage
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
erythroblast
2
fibroblast of breast
2
foreskin fibroblast
2
hepatic stellate cell
2
inflammatory macrophage
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
myoepithelial cell of mammary gland
2
naive B cel
2
renal cortical epithelial cell
2
renal vesicle
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell of the coronary artery
2
vascular associated smooth muscle cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Schwann cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipocyte
1
alpha-beta T cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac atrium fibroblast
1
cardiac muscle cell
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
conventional dendritic cell
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
epithelial cell of esophagus
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
Life stage
1
adult
Date released
1
August, 2021
1
May, 2020
Software used
1
chicago
1
r
1
seurat
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
assembly!
GRCh38
Showing 2 of 2 results
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Download
FileSet
DSR514IJW
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for alternatively activated macrophage
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR105LDS
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of alternatively activated macrophage
Lab:
AMP-T2D consortium
Project:
AMP