Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
45
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
26
B cell
25
monocyte
23
CD4-positive, alpha-beta memory T cell
21
epithelial cell of proximal tubule
18
glomerular endothelial cell
18
regulatory T cell
17
endothelial cell
16
T-helper 1 cell
15
CD8-positive, alpha-beta memory T cell
15
T-helper 17 cell
15
foreskin keratinocyte
15
hepatocyte
14
endothelial cell of umbilical vein
14
foreskin fibroblast
14
mononuclear cell
14
natural killer cell
13
CD4-positive, alpha-beta T cell
13
fibroblast of lung
13
trophoblast cell
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neutrophil
12
pancreatic ductal cell
12
skeletal muscle myoblast
11
T-helper 2 cell
11
keratinocyte
11
osteoblast
10
T cell
10
neurosphere
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
9
bronchial epithelial cell
9
fibroblast of dermis
9
mature neutrophil
9
pancreatic acinar cell
8
dermis blood vessel endothelial cell
8
glomerular visceral epithelial cell
8
mammary gland epithelial cell
7
epithelial cell of prostate
7
fibroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
macrophage
6
T-cell
6
alternatively activated macrophage
6
astrocyte
6
cardiac muscle cell
6
erythroblast
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
kidney interstitial cell
6
kidney tubule cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
retinal pigment epithelial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
hepatic stellate cell
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
skeletal muscle satellite cell
5
smooth muscle cell
4
adult endothelial progenitor cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
lung microvascular endothelial cell
4
mast cell
4
memory B cell
4
mesenchymal stem cell
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
skin fibroblast
4
smooth muscle cell of the brain vasculature
4
tracheal epithelial cell
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
aortic adventitial fibroblast
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
fibroblast of gingiva
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
non-pigmented ciliary epithelial cell
3
pancreatic quiescent stellate cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
preadipocyte
3
renal epithelial cell
3
stromal cell of bone marrow
3
type I muscle cell
3
type II muscle cell
2
cardiac fibroblast
2
Adipose stromal cell
Date released
1
January, 2021
Software used
1
cicero
Lab
1
Kyle Gaulton, UCSD
Project
1
T1D
RFA
1
T1D
assembly!
GRCh38
annotation_type!
accessible chromatin
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR059MDJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of plasmacytoid_dendritic
Lab:
Kyle Gaulton, UCSD
Project:
T1D