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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
0
cell line
Biosample term
129
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
53
H1-hESC
48
CD8-positive, alpha-beta T cell
41
K562
40
B cell
37
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
fibroblast
30
macrophage
26
MCF-7
26
regulatory T cell
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
pericyte cell
21
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
20
breast cancer cell
20
mononuclear cell
20
smooth muscle cell
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
foreskin keratinocyte
19
natural killer cell
18
pancreatic ductal cell
18
trophoblast cell
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
osteoblast
16
GM12878
16
H9
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
15
CD4-positive, alpha-beta T cell
15
neutrophil
15
skeletal muscle myoblast
14
pancreatic beta cell
13
bronchial epithelial cell
13
neurosphere
13
pancreatic acinar cell
13
skeletal muscle satellite cell
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
mammary gland epithelial cell
12
neuroblastoma cell
12
pancreatic alpha cell
11
epithelial cell of prostate
11
erythroblast
11
excitatory neuron
11
glomerular visceral epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic delta cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
liposarcoma
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
MM.1S
8
NAMALWA cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skeletal muscle fiber
8
skin fibroblast
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
KARPAS-422 cell
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
renal cortical epithelial cell
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
LHCN-M2
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
iPSC derived cell line
6
induced pluripotent stem cell
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
A172
5
A673
5
ACHN
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Caki2
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM04503
5
GM04504
5
Glomerular Capillary Endothelial Cell
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KBM-7
5
Lymphatic Endothelial Cell
Organ
7
musculature of body
Life stage
1
unknown
Date released
3
February, 2024
2
November, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
5
AMP
2
ENCODE
RFA
4
AMP2
2
ENCODE3
1
AMP
award.project!
T1D
Showing 7 of 7 results
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Download
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR940UYQ
released
Annotation file set
: Accessible chromatin annotation of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP