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Schema
Citing CMDGA
Clear Filters
Annotation type
5
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
7
ChIP-seq
DNase-seq
1
pCHi-C
1
scRNA-seq
Available data
4
bed bed9+
1
bed bed3+
1
bed bed9
1
tsv
1
txt
File set status
7
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
128
monocyte
41
CD8-positive, alpha-beta T cell
39
endothelial cell
29
fibroblast
28
macrophage
27
hepatocyte
20
pericyte cell
20
smooth muscle cell
18
epithelial cell of proximal tubule
18
pancreatic beta cell
18
regulatory T cell
17
B cell
17
pancreatic alpha cell
17
pancreatic ductal cell
16
endothelial cell of hepatic sinusoid
16
pancreatic delta cell
15
glomerular endothelial cell
15
pancreatic acinar cell
14
T cell
13
T-helper 1 cell
13
T-helper 17 cell
13
astrocyte
13
common myeloid progenitor, CD34-positive
12
excitatory neuron
11
keratinocyte
11
natural killer cell
10
erythroblast
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
osteoblast
10
skeletal muscle satellite cell
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
skeletal muscle fiber
8
endothelial cell of umbilical vein
8
glutamatergic neuron
8
mammary epithelial cell
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
foreskin fibroblast
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mammary gland epithelial cell
7
mesangial cell
7
mononuclear cell
7
skeletal muscle myoblast
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
gamma-delta T cell
6
mast cell
6
mesenchymal stem cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
plasma cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
bronchial epithelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
myofibroblast cell
5
pancreatic endothelial cell
5
retinal pigment epithelial cell
5
trophoblast cell
4
CD14-positive monocyte
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
foreskin keratinocyte
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
aortic adventitial fibroblast
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epithelial cell of esophagus
3
glial cell
3
goblet cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
meso-epithelial cell
Organ
1
connective tissue
1
extraembryonic component
Life stage
3
adult
2
child
1
embryonic
Date released
4
May, 2022
1
August, 2021
1
May, 2020
1
September, 2022
Software used
5
chromhmm
1
chicago
1
r
1
seurat
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
annotation_type_category!
DNase-seq
Showing 7 of 7 results
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Download
FileSet
DSR622XQO
released
Annotation file set
: Chromatin states for BSS00076 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR590QEG
released
Annotation file set
: Chromatin state of alternatively activated macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394RZD
released
Annotation file set
: Chromatin state of alternatively activated macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR444PFI
released
Annotation file set
: Chromatin state of alternatively activated macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR620CTT
released
Annotation file set
: Chromatin state of alternatively activated macrophage from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514IJW
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for alternatively activated macrophage
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR105LDS
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of alternatively activated macrophage
Lab:
AMP-T2D consortium
Project:
AMP