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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
variant allelic effects
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
Biosample term
27
common myeloid progenitor, CD34-positive
14
B cell
14
CD4-positive, alpha-beta memory T cell
11
foreskin keratinocyte
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta T cell
7
endothelial cell of umbilical vein
7
mononuclear cell
7
neurosphere
7
trophoblast cell
6
T cell
6
T-helper 1 cell
6
dermis blood vessel endothelial cell
6
fibroblast
6
fibroblast of lung
6
foreskin fibroblast
6
natural killer cell
5
T-helper 17 cell
5
T-helper 2 cell
5
regulatory T cell
5
skeletal muscle myoblast
4
T-cell
4
bronchial epithelial cell
4
cardiac muscle cell
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
keratinocyte
4
mammary gland epithelial cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
cardiac fibroblast
3
choroid plexus epithelial cell
3
enterocyte
3
epithelial cell of proximal tubule
3
fibroblast of cardiac tissue
3
glomerular endothelial cell
3
hepatocyte
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
lung microvascular endothelial cell
3
macrophage
3
mammary epithelial cell
myofibroblast cell
3
naive T cell
3
renal cortical epithelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
2
cardiac fibroblast
2
CD1c-positive myeloid dendritic cell
2
Schwann cell
2
astrocyte
2
astrocyte of the spinal cord
2
basal cell
2
brain microvascular endothelial cell
2
brain pericyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
non-pigmented ciliary epithelial cell
2
osteoblast
2
pulmonary artery endothelial cell
2
retinal pigment epithelial cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell
2
stromal cell of bone marrow
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
bronchial goblet cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
granulosa cell
1
luminal epithelial cell of mammary gland
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary stem cell
1
mast cell
1
mesenchymal stem cell
1
mesothelial cell
1
naive t cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
regular cardiac myocyte
1
thyroid follicular cell
1
type II pneumocyte
Life stage
2
unknown
Date released
2
February, 2021
1
February, 2024
1
May, 2020
Software used
2
deltasvm
2
encode-ccres
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
biosample_term_name!
myofibroblast cell
Showing 4 of 4 results
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Download
FileSet
DSR732JRY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR009TSB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP