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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
target gene predictions
6
candidate regulatory elements
6
chromatin state
4
accessible chromatin
3
binding sites
2
histone modifications
2
variant allelic effects
Annotation Category
7
Target gene links
Annotation type Category
4
ATAC-seq
4
DNase-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
1
HiC
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
18
CD14-positive monocyte
11
common myeloid progenitor, CD34-positive
9
pericyte cell
8
B cell
7
endothelial cell
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
mononuclear cell
5
natural killer cell
5
trophoblast cell
4
endothelial cell of umbilical vein
4
fibroblast
4
foreskin keratinocyte
4
pancreatic delta cell
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
T cell
3
astrocyte
3
colon epithelial cell
3
fibroblast of cardiac tissue
3
keratinocyte
3
luminal epithelial cell of mammary gland
3
macrophage
3
mammary gland epithelial cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
regulatory T cell
3
skin fibroblast
3
type B pancreatic cell
2
CD4-positive helper T cell
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
activated CD4-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
enteric smooth muscle cell
2
erythroblast
2
fibroblast of breast
2
fibroblast of dermis
2
fibroblast of lung
2
foreskin fibroblast
2
gabaergic neuron
2
glutamatergic neuron
2
hepatocyte
2
kidney tubule cell
2
megakaryocyte
2
memory B cell
2
monocyte
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
type II pneumocyte
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
fat cell
1
fibroblast of arm
1
foreskin melanocyte
1
foveolar cell of stomach
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
hepatic stellate cell
1
inflammatory macrophage
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
luteal cell
1
mammary epithelial cell
1
mammary stem cell
1
mast cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesothelial cell
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
natural killer cell mediated cytotoxicity
1
neutrophil
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
osteoblast
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle myoblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
7
epithelium
4
blood vessel
4
vasculature
4
vein
3
skin of body
Life stage
2
newborn
unknown
Date released
2
May, 2021
2
November, 2021
2
September, 2022
1
March, 2020
Software used
4
abc
2
r
1
hiccups
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
Project
5
AMP
2
ENCODE
RFA
5
AMP
2
ENCODE3
relevant_life_stage!
unknown
Showing 7 of 7 results
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Download
FileSet
DSR936NVU
released
Annotation file set
: Target gene predictions for BSS00298 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR099GIV
released
Annotation file set
: Target gene predictions for BSS00296 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR926EGV
released
Annotation file set
: enhancer-gene predicton of keratinocyte-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP