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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
4
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
14
endothelial cell of hepatic sinusoid
10
hepatocyte
9
endothelial cell
5
smooth muscle cell
4
mesenchymal stem cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
2
adipocyte
2
fibroblast
2
glial cell
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
macrophage
2
neural cell
2
renal principal cell
2
skeletal muscle satellite cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
natural killer cell
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
Organ
6
connective tissue
Life stage
2
adult
Date released
3
February, 2024
2
May, 2022
1
October, 2022
Software used
3
macs
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
2
Bing Ren, UCSD
Project
6
AMP
RFA
18
ENCODE3
12
AMP
6
AMP2
Showing 6 of 6 results
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Download
FileSet
DSR548JZG
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR988BGT
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 1) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP