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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
33
monocyte
24
endothelial cell
21
hepatocyte
17
epithelial cell of proximal tubule
16
fibroblast
16
glomerular endothelial cell
14
macrophage
12
excitatory neuron
12
regulatory T cell
11
pancreatic beta cell
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic alpha cell
10
pericyte cell
10
smooth muscle cell
9
T-helper 17 cell
9
astrocyte
9
pancreatic acinar cell
9
pancreatic ductal cell
8
B cell
8
pancreatic delta cell
7
CD8-positive, alpha-beta T cell
7
glomerular visceral epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
osteoblast
7
skeletal muscle fiber
7
skeletal muscle satellite cell
6
T cell
6
gamma-delta T cell
6
glutamatergic neuron
6
naive thymus-derived CD8-positive, alpha-beta T cell
5
T-helper 2 cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
4
T follicular helper cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
pancreatic polypeptide-secreting cell
4
pancreatic stellate cell
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adipocyte
3
adult endothelial progenitor cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
mesenchymal stem cell
3
naive regulatory T cell
3
plasma cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
type I pneumocyte
2
Kupffer cell
2
Muller cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
keratinocyte
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
luminal epithelial cell of mammary gland
2
mast cell
2
megakaryocyte
2
mesothelial cell
2
myeloid dendritic cell
2
naive B cel
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neural cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endothelial cell
2
plasmacytoid dendritic cell
2
renal principal cell
2
renal vesicle
2
schwann cell
2
skin fibroblast
2
smooth muscle cell of the esophagus
2
ureteric bud
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Schwann cell
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
Date released
2
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP2
1
ENCODE3
Showing 3 of 3 results
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Download
FileSet
DSR787MRF
released
Annotation file set
: Accessible chromatin annotation of Fetal Enteric Glia from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR154JTR
released
Annotation file set
: Cell type chromatin broad peaks and bw of glial Schwann from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR429BRE
released
Annotation file set
: Cell type gene expression mean TPM and bw of glial Schwann from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP