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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
gene expression
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
40
common myeloid progenitor, CD34-positive
23
CD4-positive, alpha-beta memory T cell
22
B cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
13
mononuclear cell
12
CD14-positive monocyte
11
CD4-positive, alpha-beta T cell
11
endothelial cell of umbilical vein
11
trophoblast cell
10
fibroblast of lung
10
neurosphere
9
T-helper 1 cell
9
natural killer cell
8
CD8-positive, alpha-beta T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
regulatory T cell
7
fibroblast of dermis
7
foreskin fibroblast
7
mature neutrophil
7
skeletal muscle myoblast
6
bronchial epithelial cell
6
epithelial cell of prostate
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
keratinocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
foreskin melanocyte
5
kidney tubule cell
4
T-cell
4
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
skin fibroblast
3
CD1c-positive myeloid dendritic cell
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
choroid plexus epithelial cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
inflammatory macrophage
3
iris pigment epithelial cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
non-pigmented ciliary epithelial cell
3
osteoblast
3
pulmonary artery endothelial cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
cardiac muscle cell
2
dermis microvascular lymphatic vessel endothelial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroblast
2
hepatic stellate cell
2
hepatocyte
2
kidney capillary endothelial cell
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
mesenchymal stem cell
2
pericyte cell
2
regular cardiac myocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
amniotic epithelial cell
1
brain pericyte
1
effector memory CD4-positive, alpha-beta T cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
mature eosinophil
Organ
3
epithelium
3
kidney
Life stage
2
child
1
young adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR003INP
released
Annotation file set
: Candidate regulatory elements for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236ODB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP