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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
18
monocyte
16
fibroblast
15
endothelial cell
12
excitatory neuron
12
macrophage
10
pericyte cell
9
smooth muscle cell
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
7
pancreatic alpha cell
6
B cell
6
T cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
pancreatic acinar cell
6
pancreatic ductal cell
5
erythroblast
5
inhibitory neuron
5
osteoblast
5
pancreatic delta cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
memory B cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
hepatic stellate cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
retinal pigment epithelial cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Muller cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
renal cortical epithelial cell
2
schwann cell
2
skeletal muscle myoblast
2
skin fibroblast
2
smooth muscle cell of the esophagus
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
aortic adventitial fibroblast
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
intestinal tuft cell
1
iris pigment epithelial cell
1
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
regular atrial cardiac myocyte
1
renal epithelial cell
Organ
3
connective tissue
3
liver
Life stage
1
adult
Date released
2
November, 2021
1
January, 2020
1
June, 2020
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR274TCU
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Stellate Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR779LRI
released
Annotation file set
: Accessible chromatin annotation of Fetal Photoreceptor Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR575AGN
released
Annotation file set
: Accessible chromatin annotation for Liver Hepatic Stellate Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691EDI
released
Annotation file set
: Accessible chromatin annotation of liver hepatic stellate cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP