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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
scRNA-seq
Available data
2
bed bed3+
1
tsv
1
txt
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
130
monocyte
49
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
38
endothelial cell
33
B cell
30
hepatocyte
29
fibroblast
28
macrophage
27
CD14-positive monocyte
24
regulatory T cell
21
natural killer cell
20
endothelial cell of umbilical vein
19
T cell
19
T-helper 1 cell
19
epithelial cell of proximal tubule
19
foreskin keratinocyte
19
pancreatic ductal cell
19
pericyte cell
19
smooth muscle cell
18
trophoblast cell
17
glomerular endothelial cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
foreskin fibroblast
16
mononuclear cell
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD8-positive, alpha-beta memory T cell
15
pancreatic delta cell
13
T-helper 2 cell
13
astrocyte
13
neurosphere
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
mammary epithelial cell
12
skeletal muscle satellite cell
11
erythroblast
11
glomerular visceral epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
10
T-helper 17 cell
10
dermis blood vessel endothelial cell
10
keratinocyte
10
kidney tubule cell
10
mammary gland epithelial cell
10
osteoblast
9
CD4-positive, alpha-beta memory T cell
9
fibroblast of cardiac tissue
9
fibroblast of lung
9
hepatic stellate cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
neutrophil
7
type II pneumocyte
6
alternatively activated macrophage
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of dermis
6
foreskin melanocyte
6
gamma-delta T cell
6
mast cell
6
mesenchymal stem cell
6
naive B cell
6
naive T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
retinal pigment epithelial cell
6
type I muscle cell
6
type II muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
tracheal epithelial cell
4
cardiac fibroblast
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
bronchial epithelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
kidney connecting tubule epithelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal cortical epithelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
CD1c-positive myeloid dendritic cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
Organ
3
epithelium
2
esophagus
1
kidney
Life stage
unknown
1
adult
Date released
2
February, 2024
1
August, 2021
Software used
2
deltasvm
1
r
1
seurat
Lab
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
3
AMP
RFA
2
AMP
1
AMP2
relevant_life_stage!
unknown
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR749FQK
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney loop of Henle ascending limb epithelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR545JGJ
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR761QWI
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP