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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
115
monocyte
47
CD8-positive, alpha-beta T cell
30
endothelial cell
29
fibroblast
28
common myeloid progenitor, CD34-positive
26
macrophage
23
CD14-positive monocyte
23
hepatocyte
22
B cell
20
pericyte cell
19
smooth muscle cell
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
15
CD4-positive, alpha-beta T cell
15
regulatory T cell
14
CD4-positive, alpha-beta memory T cell
14
T cell
14
astrocyte
14
foreskin fibroblast
13
keratinocyte
13
mammary epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
natural killer cell
13
osteoblast
13
pancreatic ductal cell
12
excitatory neuron
12
pancreatic beta cell
11
erythroblast
11
foreskin keratinocyte
11
neutrophil
11
pancreatic alpha cell
11
skeletal muscle myoblast
10
T-helper 1 cell
10
fibroblast of lung
10
pancreatic acinar cell
10
pancreatic delta cell
10
trophoblast cell
9
mature neutrophil
9
skeletal muscle satellite cell
8
CD8-positive, alpha-beta memory T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
bronchial epithelial cell
8
glutamatergic neuron
8
mononuclear cell
8
retinal pigment epithelial cell
7
cardiac muscle cell
7
mammary gland epithelial cell
7
neurosphere
7
skeletal muscle fiber
7
type II pneumocyte
6
T-cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
enterocyte
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
hepatic stellate cell
6
memory B cell
6
mesenchymal stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
basal cell
5
choroid plexus epithelial cell
5
epithelial cell of prostate
5
epithelial cell of proximal tubule
5
gabaergic neuron
5
glomerular endothelial cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
5
kidney tubule cell
5
luminal epithelial cell of mammary gland
5
mast cell
5
myofibroblast cell
5
naive B cell
5
plasma cell
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
skin fibroblast
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
foreskin melanocyte
4
glomerular visceral epithelial cell
4
inflammatory macrophage
4
kidney epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myoepithelial cell of mammary gland
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
T follicular helper cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
adipocyte
3
blood cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
erythroid cell
3
fibroblast of peridontal ligament
3
fibroblast of the aortic adventitia
3
goblet cell
3
iris pigment epithelial cell
3
kidney capillary endothelial cell
3
lung microvascular endothelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive T cell
3
naive t cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Adipose stromal cell
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
Organ
3
epithelium
Life stage
2
unknown
Date released
1
February, 2021
1
June, 2020
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
software_used.software.name!
r
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR561UII
released
Annotation file set
: Chromatin states for BSS01385 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR622ULQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE non-pigmented ciliary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR568ZXB
released
Annotation file set
: Accessible chromatin annotation for Others HNPCEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP