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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bigWig
1
bigBed narrowPeak
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
5
hepatocyte
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
2
endothelial cell
2
fibroblast
2
pancreatic alpha cell
2
pancreatic beta cell
1
cardiac fibroblast
1
T cell
1
gabaergic neuron
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
neuron
1
non-neuronal cell
1
oligodendrocyte
1
osteoblast
1
pancreatic acinar cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
smooth muscle cell
Organ
2
epithelium
2
pancreas
Life stage
2
adult
1
unknown
Date released
1
February, 2024
1
October, 2019
Software used
2
macs
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
acute myeloid leukemia cell
Showing 2 of 2 results
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Download
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP