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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bam
1
bed bed9
1
bed gappedPeak
1
xls
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
23
CD4-positive, alpha-beta memory T cell
13
common myeloid progenitor, CD34-positive
11
T-helper 17 cell
8
bronchial epithelial cell
8
epithelial cell of prostate
8
neutrophil
7
B cell
7
CD8-positive, alpha-beta memory T cell
7
fibroblast of lung
7
keratinocyte
7
osteoblast
6
dermis lymphatic vessel endothelial cell
6
fibroblast of dermis
5
lung microvascular endothelial cell
5
skeletal muscle myoblast
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
T-helper 1 cell
4
T-helper 2 cell
4
astrocyte
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
choroid plexus epithelial cell
4
epithelial cell of esophagus
4
epithelial cell of proximal tubule
4
fibroblast of gingiva
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
4
glomerular endothelial cell
4
iris pigment epithelial cell
4
kidney epithelial cell
4
mononuclear cell
4
non-pigmented ciliary epithelial cell
4
pulmonary artery endothelial cell
4
regulatory T cell
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
stromal cell of bone marrow
3
CD4-positive, alpha-beta T cell
3
T cell
3
aortic endothelial cell
3
epidermal melanocyte
3
epithelial cell of amnion
3
fibroblast of cardiac tissue
3
hepatocyte
3
mammary gland epithelial cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
pericyte cell
3
regular cardiac myocyte
2
T-cell
2
cardiac muscle cell
2
dermis microvascular lymphatic vessel endothelial cell
1
cardiac fibroblast
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
amniotic epithelial cell
1
brain pericyte
1
cardiac fibroblast
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell
1
leukocyte
1
mammary epithelial cell
1
mesenchymal stem cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
skeletal muscle satellite cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
4
musculature of body
1
epithelium
1
pancreas
Life stage
5
unknown
4
adult
Date released
4
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR253DCD
released
Annotation file set
: Chromatin states for BSS01572 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101OOW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP