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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
2
histone modifications
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
DNase-seq
Available data
4
bed bed3+
4
bigWig
1
bigBed narrowPeak
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
2
tissue
Biosample term
18
monocyte
7
hepatocyte
6
pancreatic beta cell
5
endothelial cell
5
osteoblast
5
pancreatic alpha cell
5
regulatory T cell
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
4
pancreatic delta cell
4
pancreatic ductal cell
3
cardiac fibroblast
3
B cell
3
CD8-positive, alpha-beta T cell
3
T-helper 1 cell
3
macrophage
3
memory B cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic acinar cell
3
smooth muscle cell
2
T cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
bone marrow cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
extracellular matrix secreting cell
2
fibroblast
2
gamma-delta T cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive regulatory T cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
type I muscle cell
2
type II muscle cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
aortic adventitial fibroblast
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial epithelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of proximal tubule
1
erythrocyte
1
erythroid cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
gabaergic neuron
1
glial cell
1
immature natural killer cell
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
megakaryocyte
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
peripheral blood stem cell
1
plasma cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary artery endothelial cell
1
pulmonary interstitial fibroblast
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle cell
1
skin fibroblast
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
stellate neuron
1
tracheal epithelial cell
1
trophoblast cell
1
type I pneumocyte
1
type II pneumocyte
Organ
4
epithelium
4
pancreas
1
connective tissue
Life stage
1
adult
1
child
Date released
1
April, 2020
1
February, 2024
1
January, 2021
1
June, 2020
1
October, 2019
Software used
4
macs
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
3
AMP
1
LungMap
1
T1D
RFA
ENCODE3
3
AMP
1
LungMap2
1
T1D
award.rfa!
ENCODE3
Showing 5 of 5 results
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Download
FileSet
DSR355WZY
released
Annotation file set
: ATAC-seq peaks in pericytes from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR434XUW
released
Annotation file set
: Accessible chromatin annotation for Pancreas HPDE6 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR780YWW
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR553FGJ
released
Annotation file set
: pancreatic ductal cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR920WKD
released
Annotation file set
: Pancreatic ductal cell accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP