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Schema
Citing CMDGA
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Annotation type
9
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
1
variant allelic effects
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
15
CD14-positive monocyte
9
pericyte cell
7
endothelial cell
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
4
fibroblast
4
pancreatic delta cell
3
CD4-positive, alpha-beta T cell
3
astrocyte
3
colon epithelial cell
3
keratinocyte
3
macrophage
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
B cell
2
CD4-positive helper T cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
hepatocyte
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
smooth muscle cell of the esophagus
2
type II pneumocyte
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
fat cell
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
foveolar cell of stomach
1
granular cell of epidermis
1
inflammatory macrophage
1
intestinal tuft cell
1
luteal cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesothelial cell
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
natural killer cell mediated cytotoxicity
1
neutrophil
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
osteoblast
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
trophoblast cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
2
January, 2021
1
February, 2021
Software used
3
cicero
Lab
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
annotation_type_category!
ChIP-seq
Showing 3 of 3 results
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Download
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP