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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
monocyte
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
21
T-helper 17 cell
19
foreskin keratinocyte
19
glomerular endothelial cell
19
hepatocyte
19
mononuclear cell
19
natural killer cell
18
endothelial cell of umbilical vein
17
CD8-positive, alpha-beta T cell
17
T cell
17
T-helper 2 cell
16
fibroblast of lung
16
macrophage
16
trophoblast cell
15
endothelial cell
13
CD4-positive, alpha-beta T cell
13
neurosphere
13
neutrophil
13
skeletal muscle myoblast
12
fibroblast of dermis
11
foreskin fibroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
dermis blood vessel endothelial cell
10
keratinocyte
10
mammary gland epithelial cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
9
epithelial cell of prostate
9
fibroblast
9
fibroblast of cardiac tissue
9
glomerular visceral epithelial cell
9
naive T cell
9
pancreatic acinar cell
9
pancreatic ductal cell
8
bronchial epithelial cell
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
osteoblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
skeletal muscle satellite cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
mammary epithelial cell
6
memory B cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
renal cortical epithelial cell
6
skin fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of the aortic adventitia
5
fibroblast of villous mesenchyme
5
hepatic stellate cell
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mesangial cell
5
mesenchymal stem cell
5
naive B cell
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of hepatic sinusoid
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
pericyte cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
basal cell
3
blood cell
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
Organ
1
epithelium
1
lung
Date released
1
April, 2020
Lab
1
Xin Sun, UCSD
Project
1
LungMap
RFA
ENCODE3
1
LungMap2
software_used.software.name!
macs
award.rfa!
ENCODE3
Showing 1 of 1 results
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap