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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
54
common myeloid progenitor, CD34-positive
37
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
25
monocyte
23
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
21
T-helper 17 cell
21
endothelial cell
20
hepatocyte
19
foreskin keratinocyte
19
glomerular endothelial cell
19
mononuclear cell
19
natural killer cell
18
CD8-positive, alpha-beta T cell
18
endothelial cell of umbilical vein
17
T cell
17
T-helper 2 cell
17
macrophage
16
fibroblast of lung
16
trophoblast cell
14
CD4-positive, alpha-beta T cell
13
fibroblast
13
neurosphere
13
neutrophil
13
pericyte cell
13
skeletal muscle myoblast
12
fibroblast of dermis
12
keratinocyte
11
foreskin fibroblast
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic delta cell
11
smooth muscle cell
10
dermis blood vessel endothelial cell
10
fibroblast of cardiac tissue
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic ductal cell
9
epithelial cell of prostate
9
glomerular visceral epithelial cell
9
naive T cell
8
astrocyte
8
bronchial epithelial cell
8
fibroblast of breast
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
osteoblast
8
skeletal muscle satellite cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
memory B cell
7
skin fibroblast
6
T-cell
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
kidney interstitial cell
6
mammary epithelial cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
renal cortical epithelial cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of the aortic adventitia
5
fibroblast of villous mesenchyme
5
hepatic stellate cell
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mesangial cell
5
mesenchymal stem cell
5
naive B cell
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
adult endothelial progenitor cell
4
astrocyte of the spinal cord
4
basal cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of hepatic sinusoid
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
4
skeletal muscle fiber
4
stromal cell of bone marrow
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
Organ
2
epithelium
2
lung
Date released
1
April, 2020
1
November, 2021
Software used
macs
1
abc
Lab
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
1
ENCODE
1
LungMap
RFA
1
ENCODE3
1
LungMap2
software_used.software.name!
macs
biosample_term_name!
alternatively activated macrophage
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR664CZE
released
Annotation file set
: ATAC-seq peaks in AT1 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE