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Schema
Citing CMDGA
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Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
127
monocyte
43
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
35
B cell
32
endothelial cell
29
fibroblast
28
hepatocyte
28
macrophage
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
24
regulatory T cell
22
T cell
pericyte cell
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
smooth muscle cell
19
T-helper 17 cell
18
mononuclear cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
natural killer cell
16
pancreatic acinar cell
16
pancreatic delta cell
16
pancreatic ductal cell
15
T-helper 2 cell
15
astrocyte
15
endothelial cell of umbilical vein
15
pancreatic alpha cell
14
trophoblast cell
13
fibroblast of lung
13
keratinocyte
13
neutrophil
12
excitatory neuron
12
fibroblast of cardiac tissue
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
skeletal muscle myoblast
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
osteoblast
9
kidney tubule cell
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neurosphere
9
skeletal muscle fiber
9
skin fibroblast
8
epithelial cell of proximal tubule
8
glomerular endothelial cell
8
glutamatergic neuron
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
epithelial cell of prostate
7
foreskin fibroblast
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
mature neutrophil
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
fibroblast of breast
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
gamma-delta T cell
4
iris pigment epithelial cell
4
mammary epithelial cell
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pulmonary artery endothelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
Organ
2
vasculature
Date released
February, 2021
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
month_released!
February, 2021
biosample_term_name!
pericyte cell
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP