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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
27
CD8-positive, alpha-beta T cell
26
monocyte
23
CD4-positive, alpha-beta memory T cell
20
endothelial cell of umbilical vein
19
CD14-positive monocyte
19
foreskin keratinocyte
18
trophoblast cell
17
T-helper 17 cell
16
foreskin fibroblast
15
osteoblast
14
common myeloid progenitor, CD34-positive
14
regulatory T cell
13
B cell
13
hepatocyte
13
keratinocyte
13
neurosphere
12
bronchial epithelial cell
12
endothelial cell
12
macrophage
12
pancreatic ductal cell
11
T-helper 1 cell
11
fibroblast of lung
11
mammary epithelial cell
11
skeletal muscle myoblast
10
T-helper 2 cell
10
neutrophil
9
epithelial cell of prostate
9
fibroblast
9
retinal pigment epithelial cell
8
astrocyte
8
fibroblast of dermis
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glomerular endothelial cell
8
pancreatic acinar cell
7
CD1c-positive myeloid dendritic cell
7
CD8-positive, alpha-beta memory T cell
7
T cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
kidney epithelial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic beta cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skin fibroblast
7
smooth muscle cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of esophagus
6
erythroblast
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic alpha cell
6
pancreatic delta cell
6
skeletal muscle cell
6
skeletal muscle fiber
6
smooth muscle cell of the brain vasculature
5
CD4-positive, alpha-beta T cell
5
T follicular helper cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
dermis blood vessel endothelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mammary gland epithelial cell
5
memory B cell
5
mesenchymal stem cell
5
mononuclear cell
5
non-pigmented ciliary epithelial cell
5
pancreatic stellate cell
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
leukocyte
4
mature natural killer cell
4
mature neutrophil
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
naive B cell
4
natural killer cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
cardiac fibroblast
3
CD14-positive, CD16-negative classical monocyte
3
Ishikawa
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
adipocyte
3
alternatively activated macrophage
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
enterocyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
kidney interstitial cell
3
mast cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive T cell
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic quiescent stellate cell
3
pericyte cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
skeletal muscle satellite cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
basal cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
erythroid progenitor cell
2
glial cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
hepatic stellate cell
2
leukemic stem cell
2
mantle cell lymphoma cell
2
mesangial cell
2
myeloid dendritic cell
2
neural cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
peripheral blood mononuclear cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
renal vesicle
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1a B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
Organ
2
vasculature
Life stage
adult
Date released
2
February, 2024
Software used
2
deltasvm
Lab
2
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
relevant_life_stage!
adult
Showing 2 of 2 results
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Download
FileSet
DSR963XVP
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR265TNH
released
Annotation file set
: Variant allelic effects annotation of Vascular smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP