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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
0
cell line
Biosample term
131
monocyte
63
HeLa-S3
61
A549
54
common myeloid progenitor, CD34-positive
52
H1-hESC
50
CD8-positive, alpha-beta T cell
40
B cell
40
K562
38
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
macrophage
31
CD14-positive monocyte
29
fibroblast
28
regulatory T cell
25
MCF-7
23
EndoC_BH1
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
T cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
natural killer cell
20
breast cancer cell
20
mononuclear cell
20
pancreatic ductal cell
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
smooth muscle cell
18
pancreatic beta cell
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
foreskin fibroblast
17
pancreatic alpha cell
16
H9
16
HepG2
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
pancreatic acinar cell
15
CD4-positive, alpha-beta T cell
15
GM12878
15
neutrophil
15
osteoblast
15
pancreatic delta cell
14
skeletal muscle myoblast
13
bronchial epithelial cell
13
fibroblast of lung
13
neurosphere
13
skeletal muscle satellite cell
12
lymphoblastoid cell line
12
mammary epithelial cell
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
epithelial cell of prostate
11
excitatory neuron
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
22Rv1
10
Rhabdomyosarcoma
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
9
SK-N-DZ
9
choroid plexus epithelial cell
9
liposarcoma
8
B-lymphoblastoid cell line
8
HAP-1
8
HEK293
8
HT-29
8
IMR-90
8
MM.1S
8
NAMALWA cell
8
cardiac muscle cell
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
erythroblast
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
7
CD1c-positive myeloid dendritic cell
7
CMK
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
GM23248
7
HL-60
7
Jurkat
7
KARPAS-422 cell
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
SK-N-SH
7
T47D
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Daoy
6
GM10248
6
GM10266
6
GM12875
6
GM18507
6
GM19238
6
GM19239
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
LHCN-M2
6
LNCAP
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
iPSC derived cell line
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
6
plasma cell
6
smooth muscle cell of the coronary artery
5
cardiac fibroblast
5
A172
5
A673
5
ACHN
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Caki2
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM04503
5
GM04504
5
GM08714
5
GM12891
5
GM12892
5
Glomerular Capillary Endothelial Cell
5
H4
5
HK-2 cell
5
HUES64
5
KBM-7
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Non-Classical Monocyte
Life stage
2
adult
2
unknown
Date released
4
February, 2021
2
May, 2021
Software used
4
encode-ccres
2
abc
Lab
4
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
October, 2022
Showing 6 of 6 results
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Download
FileSet
DSR070OPV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683BML
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR698BIL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR801BXT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE T-cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR331JNK
released
Annotation file set
: enhancer-gene predicton of T-cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR982CMQ
released
Annotation file set
: enhancer-gene predicton of CD3-positive_T_cell-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP