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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
4
bed bed3+
2
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
0
primary cell
Biosample term
13
common myeloid progenitor, CD34-positive
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
mature neutrophil
6
adipocyte
6
mononuclear cell
5
CD14-positive, CD16-negative classical monocyte
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
fibroblast of lung
4
foreskin keratinocyte
4
neural progenitor cell
3
CD4-positive, alpha-beta T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
inflammatory macrophage
3
keratinocyte
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
regulatory T cell
3
skeletal muscle myoblast
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
fibroblast of breast
2
hepatocyte
2
kidney tubule cell
2
muscle cell
2
myoepithelial cell of mammary gland
2
neutrophil
2
skeletal muscle satellite cell
2
skin fibroblast
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
bipolar neuron
1
brain microvascular endothelial cell
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
ectodermal cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
iris pigment epithelial cell
1
islet precursor cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary epithelial cell
1
mammary stem cell
1
mature eosinophil
1
mesendoderm
1
mesodermal cell
1
neural cell
1
neuron
1
non-pigmented ciliary epithelial cell
1
olfactory neurosphere cell line
1
osteoblast
1
pericyte cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
stromal cell of bone marrow
Organ
6
connective tissue
Life stage
1
adult
1
unknown
Date released
4
August, 2017
2
September, 2022
Software used
6
chromhmm
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP