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Citing CMDGA
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Annotation type
17
accessible chromatin
6
gene expression
5
binding sites
5
target gene predictions
4
candidate regulatory elements
3
chromatin state
3
histone modifications
3
variant allelic effects
2
caQTL
2
eQTL
Annotation Category
6
Gene expression levels
Annotation type Category
5
snRNA-seq
1
RNA-seq
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
5
tissue
0
stem cell
Biosample term
2
skeletal muscle fiber
2
skeletal muscle satellite cell
1
type I muscle cell
1
type II muscle cell
Organ
235
epithelium
189
kidney
31
connective tissue
30
vasculature
24
pancreas
19
blood vessel
19
liver
6
musculature of body
5
artery
4
heart
3
lymphatic vessel
1
adipose tissue
1
pericardium
Life stage
1
adult
Date released
5
February, 2024
1
February, 2020
Software used
6
r
5
deeptools
5
samtools
5
umitools
Lab
5
Stephen Parker, UMich
1
AMP-T2D consortium
Project
6
AMP
RFA
5
AMP2
1
AMP
Showing 6 of 6 results
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FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR928HZI
released
Annotation file set
: Cell type gene expression mean TPM and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147UBG
released
Annotation file set
: Gene expression levels of Skeletal muscle satellite cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP