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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
109
monocyte
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
30
B cell
30
endothelial cell
27
CD14-positive monocyte
27
fibroblast
23
CD4-positive, alpha-beta memory T cell
21
pericyte cell
19
hepatocyte
19
macrophage
19
smooth muscle cell
16
T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
keratinocyte
15
natural killer cell
14
mononuclear cell
14
osteoblast
14
trophoblast cell
13
fibroblast of lung
13
mammary epithelial cell
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
pancreatic beta cell
12
pancreatic ductal cell
12
skeletal muscle myoblast
11
pancreatic alpha cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
mammary gland epithelial cell
10
neurosphere
10
pancreatic delta cell
9
erythroblast
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
pancreatic acinar cell
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
8
dermis blood vessel endothelial cell
8
glutamatergic neuron
7
cardiac muscle cell
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney tubule cell
7
skeletal muscle fiber
7
skin fibroblast
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
epithelial cell of proximal tubule
6
fibroblast of breast
6
hepatic stellate cell
6
luminal epithelial cell of mammary gland
6
memory B cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
CD4-positive helper T cell
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mast cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
megakaryocyte
4
mesothelial cell
4
non-pigmented ciliary epithelial cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipocyte
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
goblet cell
3
kidney capillary endothelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
schwann cell
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
alveolar macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
leukocyte
2
luteal cell
2
mammary stem cell
2
mantle cell lymphoma cell
Organ
2
epithelium
2
skin of body
Life stage
1
adult
Date released
2
November, 2021
1
November, 2022
Software used
2
macs
1
abc
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
Showing 3 of 3 results
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Download
FileSet
DSR539KBS
released
Annotation file set
: Accessible chromatin of microglia and astrocytes from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855OBU
released
Annotation file set
: Target gene predictions of Basal Epidermal (Skin) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR894JTL
released
Annotation file set
: Accessible chromatin annotation of Basal Epidermal (Skin) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE