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Citing CMDGA
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Annotation type
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
93
monocyte
42
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
24
B cell
23
CD4-positive, alpha-beta memory T cell
17
endothelial cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
foreskin keratinocyte
14
endothelial cell of umbilical vein
14
mononuclear cell
14
trophoblast cell
13
fibroblast
13
fibroblast of lung
13
keratinocyte
13
mammary epithelial cell
13
regulatory T cell
12
hepatocyte
12
natural killer cell
12
smooth muscle cell
11
CD4-positive, alpha-beta T cell
11
T cell
11
osteoblast
11
pericyte cell
11
skeletal muscle myoblast
10
T-helper 1 cell
10
bronchial epithelial cell
10
endothelial cell of hepatic sinusoid
10
neurosphere
9
fibroblast of dermis
9
mammary gland epithelial cell
9
neutrophil
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
macrophage
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
pancreatic ductal cell
7
astrocyte
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
retinal pigment epithelial cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
fibroblast of breast
6
glutamatergic neuron
6
kidney tubule cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
skin fibroblast
5
CD4-positive helper T cell
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
renal cortical epithelial cell
5
skeletal muscle satellite cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iris pigment epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mast cell
4
mesenchymal stem cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
smooth muscle cell of the brain vasculature
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the spinal cord
3
basal cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
gabaergic neuron
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
enteric smooth muscle cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
kidney capillary endothelial cell
2
leukemic stem cell
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature neutrophil
2
megakaryocyte
2
memory B cell
2
meso-epithelial cell
2
mesothelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuronal stem cell
2
oligodendrocyte
2
pancreatic endocrine cell
2
parietal cell
2
peptic cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
Organ
2
epithelium
2
stomach
Date released
1
February, 2024
1
November, 2021
Software used
1
abc
1
deltasvm
Lab
2
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
files.file_type!
bigWig
Showing 2 of 2 results
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Download
FileSet
DSR283LYA
released
Annotation file set
: Target gene predictions of Parietal Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR855UCF
released
Annotation file set
: Variant allelic effects annotation of Parietal cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP