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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
0
cell line
Biosample term
110
monocyte
61
HeLa-S3
46
CD8-positive, alpha-beta T cell
44
A549
44
H1-hESC
41
common myeloid progenitor, CD34-positive
35
K562
33
B cell
33
endothelial cell
31
fibroblast
27
CD14-positive monocyte
26
macrophage
23
CD4-positive, alpha-beta memory T cell
23
pericyte cell
21
MCF-7
21
smooth muscle cell
20
breast cancer cell
20
hepatocyte
19
HFFc6
19
keratinocyte
18
natural killer cell
17
foreskin fibroblast
16
HepG2
16
T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
foreskin keratinocyte
14
astrocyte
14
endothelial cell of umbilical vein
14
mononuclear cell
14
trophoblast cell
13
fibroblast of cardiac tissue
13
osteoblast
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
T-helper 1 cell
12
fibroblast of lung
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
endothelial cell of hepatic sinusoid
11
excitatory neuron
11
pancreatic ductal cell
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
gastric cancer cell
10
pancreatic alpha cell
10
skeletal muscle myoblast
9
T-helper 17 cell
9
T-helper 2 cell
9
cardiac muscle cell
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic acinar cell
9
pancreatic delta cell
9
skeletal muscle satellite cell
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
SK-N-SH
8
choroid plexus epithelial cell
8
fibroblast cell line
8
mammary gland epithelial cell
8
pituitary stalk
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-DZ
7
SK-N-MC
7
hepatic stellate cell
7
kidney tubule cell
7
mast cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
retinal pigment epithelial cell
7
skin fibroblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
NT2-D1 cell
6
PC-3
6
RWPE1
6
Rh-4 cell
6
SW480
6
WERI-Rb-1
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
fibroblast of pulmonary artery
6
immortal human breast epithelial cell line cell
5
cardiac fibroblast
5
CD4-positive helper T cell
5
Chondroid Chordoma
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
T47D
5
WI38
5
acute myeloid leukemia
5
dermis blood vessel endothelial cell
5
endothelial cell of lymphatic vessel
5
enterocyte
5
esophageal adenocarcinoma
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
lymphoblastoid cell line
5
myoepithelial cell of mammary gland
5
prostate cancer cell line
5
skeletal muscle fiber
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
A172
4
A673
4
ACHN
4
B-lymphocyte
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
H4
4
HAC cell
4
HBMEC cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
Ishikawa
4
L1-S8
4
M059J
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NB4
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
4
Panc1
4
RCC 7860
4
RKO
4
RPMI7951
4
RS4-11 cell
4
SJCRH30
4
SK-N-SH_RA
4
T-cell
4
U937
4
VCaP cell
4
acute myeloid leukemia cell
Organ
2
epithelium
2
stomach
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
biosample_term_name!
GM12891
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR165IBQ
released
Annotation file set
: Target gene predictions of Foveolar Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR337QFE
released
Annotation file set
: Accessible chromatin annotation of Foveolar Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE