Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
gene expression
2
accessible chromatin
1
candidate regulatory elements
Annotation Category
5
Gene expression levels
3
cis-regulatory elements
Annotation type Category
3
snDropSeq
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
RNA-seq
1
scRNA-seq
Available data
4
tsv
3
bed bed3+
3
txt
1
bigWig
File set status
8
released
Genome assembly (visualization)
3
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
2
cell line
Biosample term
128
monocyte
48
CD8-positive, alpha-beta T cell
37
endothelial cell
30
hepatocyte
29
fibroblast
26
macrophage
20
epithelial cell of proximal tubule
20
smooth muscle cell
19
CD14-positive monocyte
19
pericyte cell
18
glomerular endothelial cell
17
pancreatic ductal cell
17
regulatory T cell
16
B cell
16
endothelial cell of hepatic sinusoid
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
T-helper 1 cell
14
astrocyte
14
endothelial cell of umbilical vein
14
osteoblast
14
pancreatic acinar cell
13
foreskin fibroblast
13
mammary epithelial cell
13
pancreatic beta cell
12
T-helper 17 cell
12
excitatory neuron
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
pancreatic alpha cell
11
erythroblast
11
keratinocyte
10
T cell
10
natural killer cell
10
pancreatic delta cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
mature neutrophil
9
neutrophil
9
skeletal muscle fiber
8
T-helper 2 cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
7
cardiac muscle cell
7
fibroblast of lung
7
foreskin keratinocyte
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
alternatively activated macrophage
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
hepatic stellate cell
6
mast cell
6
olfactory receptor cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
plasma cell
6
trophoblast cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
4
CD1c-positive myeloid dendritic cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
naive B cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
club cell
3
endocardial cell
Organ
8
epithelium
8
kidney
Life stage
5
adult
1
fetal
1
young adult
Date released
5
February, 2021
September, 2022
1
August, 2021
1
February, 2020
1
June, 2020
Software used
5
r
2
macs
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
month_released!
January, 2021
September, 2022
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR291ATH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR791QII
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236ODB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR588QPP
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of Pod from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR316SLV
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Podocytes from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR459YGB
released
Annotation file set
: Gene expression levels of Kidney podocytes from RNA-seq (GSE115961)
Lab:
AMP-T2D consortium
Project:
AMP