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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
128
monocyte
43
CD8-positive, alpha-beta T cell
39
endothelial cell
31
hepatocyte
29
fibroblast
28
macrophage
27
common myeloid progenitor, CD34-positive
26
B cell
23
CD14-positive monocyte
21
epithelial cell of proximal tubule
21
pericyte cell
21
regulatory T cell
20
smooth muscle cell
18
CD4-positive, alpha-beta memory T cell
18
T cell
18
glomerular endothelial cell
18
pancreatic beta cell
18
pancreatic ductal cell
17
pancreatic alpha cell
16
T-helper 1 cell
16
T-helper 17 cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
15
astrocyte
15
natural killer cell
14
CD8-positive, alpha-beta memory T cell
14
keratinocyte
13
endothelial cell of umbilical vein
13
mononuclear cell
13
osteoblast
12
T-helper 2 cell
12
excitatory neuron
11
erythroblast
11
neutrophil
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
10
fibroblast of lung
10
mammary gland epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
trophoblast cell
9
fibroblast of cardiac tissue
9
foreskin fibroblast
9
mammary epithelial cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
8
fibroblast of dermis
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
hepatic stellate cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
kidney tubule cell
6
luminal epithelial cell of mammary gland
6
mast cell
6
mesenchymal stem cell
6
naive B cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
plasma cell
6
skin fibroblast
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of prostate
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
blood vessel smooth muscle cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of breast
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
smooth muscle cell of the esophagus
4
tracheal epithelial cell
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
Organ
4
brain
Life stage
2
unknown
Date released
2
September, 2022
1
January, 2020
1
May, 2020
Software used
1
chromhmm
1
deltasvm
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
June, 2020
annotation_type!
candidate regulatory elements
Showing 4 of 4 results
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Download
FileSet
DSR228YYU
released
Annotation file set
: Target gene predictions for BSS00090 astrocyte of the cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718VYK
released
Annotation file set
: Chromatin states for BSS00090 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR019JSU
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain cerebellum astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP