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Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
1
DNase-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
25
monocyte
21
endothelial cell
17
epithelial cell of proximal tubule
17
hepatocyte
16
macrophage
15
CD14-positive monocyte
15
glomerular endothelial cell
12
fibroblast
11
smooth muscle cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
10
pancreatic ductal cell
10
regulatory T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pericyte cell
8
CD8-positive, alpha-beta T cell
8
T-helper 1 cell
8
T-helper 17 cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
neutrophil
6
kidney interstitial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
natural killer cell
4
B cell
4
CD4-positive helper T cell
4
T cell
4
T-helper 2 cell
4
adult endothelial progenitor cell
4
astrocyte
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
4
vascular associated smooth muscle cell
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
cardiac muscle cell
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
3
enterocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mast cell
3
mesenchymal stem cell
3
myofibroblast cell
3
naive B cel
3
naive B cell
3
osteoblast
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
skeletal muscle satellite cell
3
smooth muscle cell of the coronary artery
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
Kupffer cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
alternatively activated macrophage
2
articular chondrocyte
2
blood vessel smooth muscle cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroblast
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
hepatic stellate cell
2
inflammatory macrophage
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
2
microglial cell
2
naive t cell
2
parietal cell
2
peptic cell
2
plasma cell
2
renal cortical epithelial cell
2
renal vesicle
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
thyroid follicular cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
alveolar macrophage
Organ
1
brain
1
connective tissue
Date released
1
May, 2020
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
month_released!
September, 2022
annotation_category!
cis-regulatory elements
Showing 1 of 1 results
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Download
FileSet
DSR646QPA
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain pericyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP