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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bam
1
bed bed3+
1
bed gappedPeak
1
xls
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
26
common myeloid progenitor, CD34-positive
18
CD4-positive, alpha-beta memory T cell
16
B cell
14
CD8-positive, alpha-beta memory T cell
12
mononuclear cell
8
CD14-positive monocyte
8
T cell
8
foreskin keratinocyte
8
trophoblast cell
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
mammary gland epithelial cell
6
naive T cell
6
natural killer cell
6
neurosphere
6
regulatory T cell
4
bronchial epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of breast
4
keratinocyte
4
kidney tubule cell
4
myoepithelial cell of mammary gland
4
neutrophil
4
skeletal muscle myoblast
4
skin fibroblast
3
aortic endothelial cell
2
CD1c-positive myeloid dendritic cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
foreskin fibroblast
2
foreskin melanocyte
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
hepatocyte
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
luminal epithelial cell of mammary gland
2
lung microvascular endothelial cell
2
mammary stem cell
2
non-pigmented ciliary epithelial cell
2
osteoblast
2
pericyte cell
2
pulmonary artery endothelial cell
2
regular cardiac myocyte
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle cell
2
skeletal muscle satellite cell
2
smooth muscle cell of the brain vasculature
2
stromal cell of bone marrow
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
Organ
1
epithelium
1
pancreas
Life stage
1
unknown
Date released
2
January, 2021
2
November, 2021
1
February, 2024
1
October, 2019
1
September, 2022
Software used
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP