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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
23
in vitro differentiated cells
3
primary cell
Biosample term
122
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
40
B cell
34
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
hepatocyte
26
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
fibroblast
20
T-helper 17 cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
18
T cell
18
pancreatic ductal cell
17
astrocyte
17
macrophage
17
osteoblast
17
pancreatic beta cell
16
T-helper 2 cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
keratinocyte
16
pancreatic alpha cell
16
smooth muscle cell
15
CD4-positive, alpha-beta T cell
15
pancreatic acinar cell
15
pancreatic delta cell
15
skeletal muscle myoblast
13
mammary epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary gland epithelial cell
11
erythroblast
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
mature neutrophil
9
memory B cell
9
naive T cell
9
neutrophil
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle fiber
6
T-cell
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
dermis lymphatic vessel endothelial cell
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
brain microvascular endothelial cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cortical cell of adrenal gland
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mast cell
5
mesenchymal stem cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
Organ
3
connective tissue
Date released
2
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP2
1
ENCODE3
organ_slims!
embryo
annotation_category!
Genetic variant effects
Showing 3 of 3 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP