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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
53
common myeloid progenitor, CD34-positive
38
endothelial cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
29
fibroblast
27
macrophage
26
regulatory T cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
pericyte cell
21
T-helper 1 cell
21
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
20
smooth muscle cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
17
pancreatic beta cell
17
pancreatic ductal cell
17
trophoblast cell
16
CD14-positive monocyte
16
CD8-positive, alpha-beta T cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
keratinocyte
16
osteoblast
16
pancreatic alpha cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
T-helper 2 cell
15
fibroblast of lung
15
foreskin fibroblast
15
pancreatic delta cell
14
pancreatic acinar cell
13
mammary gland epithelial cell
13
monocyte
13
neurosphere
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
mammary epithelial cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
erythroblast
10
kidney tubule cell
10
neutrophil
10
retinal pigment epithelial cell
9
hepatic stellate cell
9
mature neutrophil
9
naive T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
skin fibroblast
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pulmonary artery endothelial cell
7
type II pneumocyte
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
mast cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
pancreatic polypeptide-secreting cell
5
tracheal epithelial cell
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
megakaryocyte
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
Date released
2
January, 2021
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
Project
2
T1D
RFA
2
T1D
organ_slims!
musculature of body
month_released!
May, 2021
Showing 2 of 2 results
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Download
FileSet
DSR738GNU
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of quiescent_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR850IVU
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of quiescent_stellate
Lab:
Kyle Gaulton, UCSD
Project:
T1D