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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
heart
3
islet of Langerhans
3
tibial artery
3
tibial nerve
2
muscle of leg
2
coronary artery
2
heart left ventricle
2
left renal cortex interstitium
2
medulla oblongata
2
midbrain
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Pancreatic islets
1
adipose tissue
1
ascending aorta
1
body of pancreas
1
brain
1
caudate nucleus
1
cerebellum (Hemisphere)
1
frontal cortex
1
globus pallidus
1
heart right ventricle
1
kidney
1
left cardiac atrium
1
left renal pelvis
1
middle frontal gyrus
1
muscle of arm
1
occipital lobe
1
pancreas
1
pons
1
putamen
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right renal pelvis
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
thymus
Organ
3
pancreas
Life stage
3
adult
Date released
9
February, 2021
8
August, 2021
6
March, 2023
3
January, 2022
3
March, 2020
3
May, 2020
3
May, 2021
2
August, 2017
1
April, 2019
1
February, 2024
1
January, 2018
1
January, 2020
1
June, 2020
1
November, 2019
1
September, 2022
Software used
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159BKA
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic islet ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP