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Citing CMDGA
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Annotation type
937
candidate regulatory elements
518
target gene predictions
511
chromatin state
197
accessible chromatin
115
eQTL
110
gene expression
89
histone modifications
74
Fine-mapped variants
48
variant allelic effects
36
binding sites
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
Annotation Category
5
Genetic variant effects
Annotation type Category
3
quantitative proteomics
2
RNA-seq
1
Expression arrays
Available data
3
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
3
primary cell
Biosample term
2
cartilage tissue
2
islet of Langerhans
1
cerebrospinal fluid
Organ
2
connective tissue
2
pancreas
1
bodily fluid
Life stage
4
adult
Date released
4
August, 2021
1
March, 2023
Software used
2
fastqtl
2
peer
1
matrix-eQTL
1
qTLtools
1
r
Lab
3
AMP-T2D consortium
2
ITG
Project
3
AMP
2
ITG
RFA
3
AMP
2
ITG
Showing 5 of 5 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP