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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
candidate regulatory elements
5
target gene predictions
4
chromatin state
3
Fine-mapped variants
2
gene expression
1
eQTL
1
variant allelic effects
Annotation Category
5
Target gene links
2
Gene expression levels
Annotation type Category
5
DNase-seq
4
ChIP-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
23
heart
22
stomach
21
kidney
18
adrenal gland
18
lung
17
brain
17
small intestine
16
muscle of arm
15
placenta
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
islet of Langerhans
11
adipose tissue
11
liver
11
right lung
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
body of pancreas
7
ovary
7
sigmoid colon
6
heart right ventricle
5
aorta
5
gastrocnemius medialis
5
muscle of trunk
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
frontal cortex
4
omental fat pad
4
retina
4
right atrium auricular region
4
skeletal muscle tissue
4
testis
3
Ammon's horn
3
Peyer's patch
3
ascending aorta
3
breast epithelium
3
chorion membrane
3
esophagus
3
layer of hippocampus
3
right cardiac atrium
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
upper lobe of left lung
3
uterus
3
vagina
2
Brodmann (1909) area 46
2
angular gyrus
2
cingulate gyrus
2
colonic mucosa
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
prostate gland
2
putamen
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
stomach smooth muscle
2
thoracic aorta
2
tongue
2
urinary bladder
2
visceral abdominal adipose tissue
1
C1 segment of cervical spinal cord
1
amnion
1
amygdala
1
anterior cingulate cortex
1
aortic valve
1
arm bone
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast - mammary tissue
1
cardiac ventricle
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
diencephalon
1
embryonic facial prominence
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
femur
1
gastric (mucosa of stomach)
1
gastrocnemius medialis(Muscle - Skeletal)
1
gastroesophageal sphincter
1
germinal center
1
germinal matrix
1
globus pallidus
1
hypothalamus
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
left ventricle myocardium
1
leg bone
1
medulla oblongata
1
metanephros
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
mitral valve
1
mucosa of stomach
1
nucleus accumbens
1
parietal lobe
1
pituitary
1
pons
1
prostate
1
pulmonary valve
1
rectum smooth muscle tissue
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of body
1
small intestine - terminal Ileum
1
superior temporal gyrus
1
thyroid
1
tricuspid valve
1
umbilical cord
1
white adipose tissue
1
whole blood
Organ
7
pancreas
Life stage
6
adult
Date released
4
September, 2022
1
February, 2020
1
January, 2020
1
May, 2021
Software used
6
r
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR768RQL
released
Annotation file set
: Target gene predictions for BSS00124 body of pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR074WGL
released
Annotation file set
: Target gene predictions for BSS00123 body of pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR547MKV
released
Annotation file set
: Target gene predictions for BSS00122 body of pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR653RNT
released
Annotation file set
: Target gene predictions for BSS00121 body of pancreas from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497YZL
released
Annotation file set
: enhancer-gene predicton of body_of_pancreas-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR712VTS
released
Annotation file set
: Gene expression levels of Pancreas body from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117UDT
released
Annotation file set
: Gene expression summary of TPM of pancreas from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP