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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
79
heart
79
stomach
67
brain
65
lung
65
muscle of arm
62
kidney
59
small intestine
57
placenta
56
adrenal gland
55
muscle of leg
54
large intestine
54
muscle of back
52
left lung
44
right lung
44
thymus
40
right kidney
38
renal cortex interstitium
37
renal pelvis
36
left kidney
32
liver
28
spinal cord
28
spleen
25
heart left ventricle
20
adipose tissue
20
sigmoid colon
16
body of pancreas
16
chorionic villus
16
gastrocnemius medialis
16
muscle of trunk
16
ovary
16
thyroid gland
16
transverse colon
15
endocrine pancreas
15
layer of hippocampus
15
psoas muscle
15
testis
15
upper lobe of left lung
14
heart right ventricle
14
retina
13
Peyer's patch
13
caudate nucleus
13
skeletal muscle tissue
13
temporal lobe
13
tibial nerve
12
pancreas
12
prostate gland
11
substantia nigra
10
angular gyrus
10
aorta
10
colonic mucosa
10
esophagus squamous epithelium
10
left renal cortex interstitium
10
left renal pelvis
10
lower leg skin
10
right renal pelvis
9
ascending aorta
9
breast epithelium
9
chorion membrane
9
cingulate gyrus
9
duodenal mucosa
9
esophagus muscularis mucosa
9
left cardiac atrium
9
mucosa of rectum
9
omental fat pad
9
parathyroid adenoma
9
right renal cortex interstitium
9
stomach smooth muscle
9
thoracic aorta
9
trophoblast
8
cerebellum
8
coronary artery
8
esophagus
8
eye
8
muscle layer of colon
8
muscle layer of duodenum
8
tibial artery
8
tongue
8
vagina
7
gastroesophageal sphincter
7
limb
7
right atrium auricular region
7
urinary bladder
6
Brodmann (1909) area 46
6
frontal cortex
6
islet of Langerhans
6
right cardiac atrium
6
subcutaneous abdominal adipose tissue
5
germinal matrix
5
globus pallidus
5
midbrain
5
putamen
5
umbilical cord
5
uterus
4
Ammon's horn
4
amnion
4
cerebellar cortex
4
femur
4
middle frontal gyrus
4
mucosa of stomach
4
occipital lobe
4
rectum smooth muscle tissue
4
right lobe of liver
4
superior temporal gyrus
3
arm bone
3
embryonic facial prominence
3
germinal center
3
inferior parietal cortex
3
leg bone
3
medulla oblongata
3
pons
3
skin of body
3
subcutaneous adipose tissue
3
suprapubic skin
2
breast carcinoma
2
chorion
2
cortex of kidney
2
endometrium cancer
2
first pancreatic bud
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
placental basal plate
2
prefrontal cortex
2
respiratory system smooth muscle
2
skin of forearm
2
skin of prepuce of penis
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
caput epididymis
1
cardiogenic mesoderm
1
cartilage tissue
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
forelimb muscle
1
frontal pole
1
gyrus rectus
1
hindlimb muscle
1
hypothalamus
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
white matter
Organ
4
brain
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR595ZZM
released
Annotation file set
: Candidate regulatory elements for BSS00201 cerebellar cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR918SHV
released
Annotation file set
: Target gene predictions for BSS00201 cerebellar cortex from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323JTR
released
Annotation file set
: Chromatin states for BSS00201 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR891ASN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cerebellar cortex
Lab:
AMP-T2D consortium
Project:
AMP