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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
24
heart
21
brain
20
stomach
18
kidney
17
lung
17
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
heart left ventricle
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
liver
10
renal cortex interstitium
10
renal pelvis
10
tibial artery
9
caudate nucleus
9
left kidney
9
right atrium auricular region
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
adipose tissue
7
islet of Langerhans
7
left cardiac atrium
7
subcutaneous adipose tissue
6
Ammon's horn
6
heart right ventricle
6
pancreas
5
amygdala
5
anterior cingulate cortex
5
hypothalamus
5
nucleus accumbens
5
ovary
5
retina
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
4
C1 segment of cervical spinal cord
4
angular gyrus
4
aorta
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
psoas muscle
4
skin of body
4
temporal lobe
4
testis
4
thoracic aorta
3
Peyer's patch
3
chorion membrane
3
esophagus
3
esophagus muscularis mucosa
3
left renal cortex interstitium
3
left renal pelvis
3
prostate gland
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
upper lobe of left lung
3
vagina
2
Brodmann (1909) area 46
2
breast epithelium
2
cerebellar cortex
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
2
pons
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
1
hindlimb muscle
1
Schwann cell
1
abdominal aorta artery
1
amnion
1
arm bone
1
breast
1
cerebellar hemisphere
1
colon sigmoid
1
cortex
1
cortex of kidney
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsolateral prefrontal cortex
1
embryonic facial prominence
1
endothelial cell
1
esophagus mucosa
1
femur
1
fetal heart
1
forelimb muscle
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
leg bone
1
minor salivary gland
1
mucosa of stomach
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pituitary gland
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectum smooth muscle tissue
1
tissue-resident macrophage
1
type B pancreatic cell
1
umbilical cord
1
visceral abdominal adipose tissue
Organ
2
brain
Life stage
2
adult
Date released
1
January, 2020
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR880BBN
released
Annotation file set
: Chromatin states for BSS00386 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR715IYK
released
Annotation file set
: Accessible chromatin annotation of brain globus pallidus from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP