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Schema
Citing CMDGA
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Annotation type
5
accessible chromatin
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
21
retina
20
pigmented layer of retina
7
kidney
5
islet of Langerhans
3
liver
2
adipose tissue
2
coronary artery
2
subcutaneous adipose tissue
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
heart
1
heart left ventricle
1
omental fat pad
1
pancreas
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
right atrium auricular region
1
spleen
1
thoracic aorta
1
tibial artery
1
tibial nerve
Organ
5
pancreas
Life stage
5
adult
Date released
2
May, 2020
1
May, 2021
1
November, 2019
1
September, 2022
Software used
3
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR456JHZ
released
Annotation file set
: Accessible chromatin of ATAC-seq of human islet cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP