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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
chromatin state
14
target gene predictions
10
accessible chromatin
6
gene expression
2
histone modifications
1
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
6
Gene expression levels
2
cis-regulatory elements
Annotation type Category
6
RNA-seq
2
ChIP-seq
Available data
6
tsv
2
bed bed3+
File set status
8
released
Genome assembly (visualization)
2
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
12
islet of Langerhans
8
kidney
5
subcutaneous adipose tissue
4
bone tissue
4
brain
4
heart
3
adipose tissue
3
cerebellum
3
liver
2
amygdala
2
body of pancreas
2
caudate nucleus
2
frontal cortex
2
heart left ventricle
2
hypothalamus
2
nucleus accumbens
2
occipital lobe
2
omental fat pad
2
placenta
2
prostate gland
2
putamen
2
retina
2
right atrium auricular region
2
skeletal muscle tissue
2
stomach
2
substantia nigra
2
temporal lobe
2
testis
2
tibial nerve
2
visceral abdominal adipose tissue
1
Ammon's horn
1
Brodmann (1909) area 9
1
C1 segment of cervical spinal cord
1
Crypt of Lieberkuhn
1
adrenal gland
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
aorta
1
aortic valve
1
arcuate nucleus of hypothalamus
1
ascending aorta
1
bed nucleus of stria terminalis
1
bladder
1
breast - mammary tissue
1
breast carcinoma
1
cardiogenic mesoderm
1
cartilage tissue
1
cerebellum (Hemisphere)
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon - sigmoid
1
colon - transverse
1
colonic mucosa
1
corneal epithelium
1
coronary artery
1
cortex of kidney
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium cancer
1
entorhinal cortex
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
first pancreatic bud
1
frontal pole
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
gyrus rectus
1
heart right ventricle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney epithelium
1
large intestine
1
layer of hippocampus
1
left cardiac atrium
1
left ventricle myocardium
1
locus ceruleus
1
lung
1
mammary gland
1
medial dorsal nucleus of thalamus
1
metanephros
1
midbrain
1
minor salivary gland
1
mitral valve
1
morula
1
myelencephalon
1
nucleus of ventral thalamus
1
ovary
1
pancreas
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prefrontal cortex
1
prostate
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
respiratory system smooth muscle
1
right cardiac atrium
1
right lobe of liver
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
spleen
1
subiculum
1
superior parietal cortex
1
superior temporal gyrus
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
thymus
1
thyroid
1
tibial artery
1
tricuspid valve
1
umbilical cord
1
upper lobe of left lung
1
uterus
1
vagina
1
white matter
1
whole blood
Disease term
1
chronic kidney disease
chronic kidney disease, hypertensive disorder
1
diabetes mellitus, hypertensive disorder
1
diabetic kidney disease, hypertensive disorder
1
hypertensive disorder
Organ
8
kidney
Date released
8
February, 2021
Software used
6
r
2
macs
Lab
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Project
8
AMP
RFA
6
AMP2
2
AMP
disease_term_name!
chronic kidney disease, hypertensive disorder
Showing 8 of 8 results
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Download
FileSet
DSR007RUJ
released
Annotation file set
: Histone modifications annotation for Kidney Nephrectomy_sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761JKG
released
Annotation file set
: Histone modifications annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR383IER
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR992NTS
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR576EDR
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR860SBJ
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR103OWX
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR514WID
released
Annotation file set
: Gene expression levels of kidney from Katalin Susztak 75kidney Project RNA-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP