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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
2
target gene predictions
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
59
stomach
58
heart
49
lung
49
muscle of arm
47
brain
45
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
40
large intestine
40
placenta
39
left lung
33
right lung
31
thymus
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
22
liver
21
spinal cord
21
spleen
19
heart left ventricle
15
sigmoid colon
13
adipose tissue
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
endocrine pancreas
11
heart right ventricle
11
psoas muscle
10
Peyer's patch
10
layer of hippocampus
10
temporal lobe
10
testis
10
tibial nerve
10
upper lobe of left lung
9
caudate nucleus
9
retina
9
skeletal muscle tissue
8
angular gyrus
8
aorta
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
pancreas
8
right renal pelvis
8
substantia nigra
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
stomach smooth muscle
7
thoracic aorta
6
chorion membrane
6
coronary artery
6
esophagus
6
eye
6
gastroesophageal sphincter
6
muscle layer of colon
6
muscle layer of duodenum
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
cerebellum
5
limb
5
right atrium auricular region
5
right cardiac atrium
5
urinary bladder
4
Brodmann (1909) area 46
4
frontal cortex
4
germinal matrix
4
uterus
3
Ammon's horn
3
amnion
3
cerebellar cortex
3
femur
3
globus pallidus
3
islet of Langerhans
3
middle frontal gyrus
3
mucosa of stomach
3
putamen
3
rectum smooth muscle tissue
3
right lobe of liver
3
subcutaneous adipose tissue
3
suprapubic skin
3
umbilical cord
2
arm bone
2
chorion
2
embryonic facial prominence
2
germinal center
2
inferior parietal cortex
2
leg bone
2
medulla oblongata
2
midbrain
2
middle frontal area 46
2
occipital lobe
2
placental basal plate
2
pons
2
skin of body
2
superior temporal gyrus
1
forelimb muscle
1
hindlimb muscle
1
left leg bone
1
mid-frontal lobe
1
rectal smooth muscle tissue
1
right arm bone
1
skeletal muscle
Organ
7
intestine
7
large intestine
Life stage
6
adult
Date released
4
September, 2022
2
February, 2021
1
August, 2017
Software used
3
chromhmm
2
encode-ccres
2
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR764EPV
released
Annotation file set
: Candidate regulatory elements for BSS01283 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896LRU
released
Annotation file set
: Candidate regulatory elements for BSS01282 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180ELA
released
Annotation file set
: Chromatin states for BSS01283 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR346ASL
released
Annotation file set
: Chromatin states for BSS01282 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024EBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR719BGJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR362251
released
Annotation file set
: ChromHMM 13-state model for Rectal mucosa
Lab:
Stephen Parker, UMich
Project:
AMP