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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
3
primary cell
2
tissue
Biosample term
15
kidney
5
left cardiac atrium
4
cartilage tissue
4
liver
3
islet of Langerhans
3
subcutaneous adipose tissue
2
adrenal gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
stomach
1
Pancreatic islets
1
Schwann cell
1
adipose tissue
1
beige adipocyte
1
body of pancreas
1
breast epithelium
1
cardiac ventricle
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
coronary artery
1
duodenal mucosa
1
endothelial cell
1
gastrocnemius medialis
1
large intestine
1
layer of hippocampus
1
mid-frontal lobe
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
placenta
1
psoas muscle
1
rectum smooth muscle tissue
1
sigmoid colon
1
skeletal muscle
1
small intestine
1
spinal cord
1
spleen
1
stomach smooth muscle
1
substantia nigra
1
synovial joint
1
temporal lobe
1
thymus
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
1
epithelium
1
musculature of body
1
pancreas
Date released
1
February, 2024
1
May, 2021
Software used
1
abc
1
macs
Lab
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
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Download
FileSet
DSR243ZIR
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Alpha
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR764OIT
released
Annotation file set
: enhancer-gene predicton of muscle_of_trunk_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP