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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
5
candidate regulatory elements
5
target gene predictions
3
chromatin state
1
binding sites
1
eQTL
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
2
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
22
heart
19
brain
19
stomach
17
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
placenta
15
small intestine
14
adrenal gland
13
large intestine
13
left lung
13
muscle of back
12
thymus
11
right lung
10
liver
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
heart left ventricle
7
adipose tissue
7
spinal cord
7
spleen
6
left cardiac atrium
5
heart right ventricle
5
islet of Langerhans
5
layer of hippocampus
5
sigmoid colon
5
temporal lobe
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
gastrocnemius medialis
4
muscle of trunk
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
retina
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
Peyer's patch
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
coronary artery
3
duodenal mucosa
3
mucosa of rectum
3
right cardiac atrium
3
skeletal muscle tissue
3
stomach smooth muscle
3
substantia nigra
3
thoracic aorta
3
tibial artery
3
trophoblast
2
Brodmann (1909) area 46
2
breast epithelium
2
cerebellum
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
germinal matrix
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
midbrain
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
rectum smooth muscle tissue
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
tongue
2
urinary bladder
2
vagina
1
Ammon's horn
1
amnion
1
arm bone
1
breast carcinoma
1
caput epididymis
1
cerebellar cortex
1
colon
1
cortex of kidney
1
embryonic facial prominence
1
endometrium
1
endometrium cancer
1
epididymis
1
fallopian tube
1
femur
1
first pancreatic bud
1
gastroesophageal sphincter
1
germinal center
1
globus pallidus
1
inferior parietal cortex
1
kidney epithelium
1
leg bone
1
mammary gland
1
medulla oblongata
1
medulloblastoma
1
mid-frontal lobe
1
middle frontal gyrus
1
mucosa of stomach
1
occipital lobe
1
pons
1
prefrontal cortex
1
putamen
1
renal connecting tubule
1
respiratory system smooth muscle
1
right lobe of liver
1
skeletal muscle
1
skin of body
1
skin of forearm
1
skin of prepuce of penis
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
umbilical cord
1
uterus
Organ
4
pancreas
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
1
February, 2021
Software used
3
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR684WDC
released
Annotation file set
: Chromatin states for BSS01407 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR892WTG
released
Annotation file set
: Chromatin states for BSS01406 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR546ZVV
released
Annotation file set
: Binding sites annotation for Pancreas Pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR608480
released
Annotation file set
: ChromHMM 18-state model for Pancreas
Lab:
AMP-T2D consortium
Project:
AMP