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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
4
RNA-seq
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
41
heart
41
stomach
35
brain
34
kidney
33
lung
33
muscle of arm
29
muscle of leg
29
placenta
29
small intestine
28
adrenal gland
28
large intestine
28
muscle of back
26
left lung
22
right lung
22
thymus
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
18
liver
16
spleen
15
heart left ventricle
14
spinal cord
10
sigmoid colon
9
layer of hippocampus
9
temporal lobe
9
testis
9
upper lobe of left lung
8
adipose tissue
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
heart right ventricle
8
muscle of trunk
8
ovary
8
pancreas
8
prostate gland
8
retina
8
thyroid gland
8
transverse colon
7
Peyer's patch
7
caudate nucleus
7
endocrine pancreas
7
left cardiac atrium
7
psoas muscle
7
skeletal muscle tissue
7
substantia nigra
7
tibial nerve
6
angular gyrus
6
aorta
6
colonic mucosa
6
esophagus squamous epithelium
6
islet of Langerhans
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
right renal pelvis
6
subcutaneous abdominal adipose tissue
5
ascending aorta
5
breast epithelium
5
cingulate gyrus
5
duodenal mucosa
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mucosa of rectum
5
omental fat pad
5
parathyroid adenoma
5
right renal cortex interstitium
5
stomach smooth muscle
5
thoracic aorta
5
trophoblast
4
cerebellum
4
coronary artery
4
esophagus
4
eye
4
muscle layer of colon
4
muscle layer of duodenum
4
right cardiac atrium
4
tibial artery
4
tongue
4
vagina
3
chorion membrane
3
germinal matrix
3
globus pallidus
3
limb
3
midbrain
3
putamen
3
right atrium auricular region
3
subcutaneous adipose tissue
3
suprapubic skin
3
umbilical cord
3
urinary bladder
3
uterus
2
Ammon's horn
2
Brodmann (1909) area 46
2
amnion
2
breast carcinoma
2
cerebellar cortex
2
chorion
2
cortex of kidney
2
endometrium cancer
2
femur
2
first pancreatic bud
2
frontal cortex
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of stomach
2
occipital lobe
2
placental basal plate
2
prefrontal cortex
2
rectum smooth muscle tissue
2
respiratory system smooth muscle
2
right lobe of liver
2
skin of forearm
2
skin of prepuce of penis
2
superior temporal gyrus
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
arm bone
1
bed nucleus of stria terminalis
1
caput epididymis
1
cardiogenic mesoderm
1
cartilage tissue
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic facial prominence
1
endometrium
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
forelimb muscle
1
frontal pole
1
germinal center
1
gyrus rectus
1
hindlimb muscle
1
hypothalamus
1
inferior parietal cortex
1
intestinal epithelium
1
left leg bone
1
leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulla oblongata
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pons
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
skin of body
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
white matter
Organ
2
liver
Life stage
2
adult
Date released
1
February, 2021
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR449UIO
released
Annotation file set
: Chromatin states for BSS01519 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR839LHJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE right lobe of liver
Lab:
AMP-T2D consortium
Project:
AMP