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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
eQTL
5
gene expression
3
Fine-mapped variants
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
differential activity
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
40
stomach
39
heart
34
muscle of arm
33
lung
30
brain
30
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
renal cortex interstitium
21
right kidney
20
renal pelvis
20
thymus
18
left kidney
15
spleen
14
spinal cord
13
heart left ventricle
13
liver
10
sigmoid colon
9
body of pancreas
8
adipose tissue
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
tibial nerve
8
transverse colon
7
Peyer's patch
7
endocrine pancreas
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
psoas muscle
7
retina
7
right renal pelvis
7
testis
7
upper lobe of left lung
6
caudate nucleus
6
esophagus squamous epithelium
6
layer of hippocampus
6
lower leg skin
6
pancreas
6
right renal cortex interstitium
6
skeletal muscle tissue
5
ascending aorta
5
breast epithelium
5
coronary artery
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
omental fat pad
5
parathyroid adenoma
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tibial artery
4
angular gyrus
4
aorta
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
esophagus
4
eye
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
prostate gland
4
stomach smooth muscle
4
tongue
4
trophoblast
4
vagina
3
cerebellum
3
chorion membrane
3
frontal cortex
3
globus pallidus
3
left cardiac atrium
3
limb
3
middle frontal gyrus
3
putamen
3
subcutaneous adipose tissue
3
suprapubic skin
3
urinary bladder
3
uterus
2
muscle of leg
2
Ammon's horn
2
Brodmann (1909) area 46
2
amnion
2
cerebellar cortex
2
chorion
2
femur
2
germinal matrix
2
medulla oblongata
2
midbrain
2
middle frontal area 46
2
mucosa of stomach
2
occipital lobe
2
placental basal plate
2
pons
2
right cardiac atrium
2
right lobe of liver
2
superior temporal gyrus
2
umbilical cord
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
arm bone
1
cerebellum (Hemisphere)
1
embryonic facial prominence
1
forelimb muscle
1
germinal center
1
hindlimb muscle
1
inferior parietal cortex
1
islet of Langerhans
1
left leg bone
1
leg bone
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
right arm bone
1
skin of body
Organ
3
adipose tissue
3
connective tissue
Life stage
2
adult
Date released
2
February, 2021
1
May, 2020
Software used
2
encode-ccres
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR673AWN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR178YJU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802UOO
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose white tissue ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP