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Schema
Citing CMDGA
Clear Filters
Annotation type
12
gene expression
10
eQTL
5
candidate regulatory elements
4
chromatin state
3
target gene predictions
2
Fine-mapped variants
2
accessible chromatin
2
binding sites
2
histone modifications
2
sQTL
2
variant to gene
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
4
bed bed3+
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
3
islet of Langerhans
2
liver
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
layer of hippocampus
1
mid-frontal lobe
1
mucosa of rectum
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
pancreas
1
brain
Date released
3
August, 2017
1
April, 2019
Software used
4
chromhmm
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
assembly!
GRCh38
Showing 4 of 4 results
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Download
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR828132
released
Annotation file set
: ChromHMM 13-state model for substantia nigra
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP