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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
82
heart
81
stomach
68
brain
66
lung
66
muscle of arm
64
kidney
61
small intestine
59
adrenal gland
58
placenta
56
muscle of leg
55
large intestine
54
muscle of back
52
left lung
47
thymus
44
right lung
41
liver
40
right kidney
39
renal cortex interstitium
38
renal pelvis
36
left kidney
30
spleen
29
heart left ventricle
29
spinal cord
26
adipose tissue
22
body of pancreas
22
sigmoid colon
19
psoas muscle
19
tibial nerve
18
islet of Langerhans
18
ovary
17
caudate nucleus
17
gastrocnemius medialis
17
heart right ventricle
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
chorionic villus
16
pancreas
15
coronary artery
15
endocrine pancreas
15
layer of hippocampus
15
retina
15
skeletal muscle tissue
15
substantia nigra
15
testis
15
upper lobe of left lung
14
ascending aorta
14
tibial artery
13
Peyer's patch
13
omental fat pad
13
right atrium auricular region
13
temporal lobe
12
aorta
12
cerebellum
12
prostate gland
11
frontal cortex
11
left renal pelvis
11
right renal pelvis
11
subcutaneous adipose tissue
10
angular gyrus
10
breast epithelium
10
colonic mucosa
10
esophagus squamous epithelium
10
left cardiac atrium
10
left renal cortex interstitium
10
lower leg skin
10
thoracic aorta
10
trophoblast
9
Ammon's horn
9
chorion membrane
9
cingulate gyrus
9
duodenal mucosa
9
esophagus
9
esophagus muscularis mucosa
9
mucosa of rectum
9
parathyroid adenoma
9
putamen
9
right renal cortex interstitium
9
stomach smooth muscle
8
eye
8
muscle layer of colon
8
muscle layer of duodenum
8
right lobe of liver
8
tongue
8
vagina
7
gastroesophageal sphincter
7
limb
7
right cardiac atrium
7
urinary bladder
6
Brodmann (1909) area 46
6
subcutaneous abdominal adipose tissue
6
uterus
5
amygdala
5
cartilage tissue
5
cerebellum (Hemisphere)
5
germinal matrix
5
globus pallidus
5
hypothalamus
5
midbrain
5
nucleus accumbens
5
occipital lobe
5
umbilical cord
4
C1 segment of cervical spinal cord
4
amnion
4
anterior cingulate cortex
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
femur
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
middle frontal gyrus
4
mucosa of stomach
4
rectum smooth muscle tissue
4
superior temporal gyrus
3
arm bone
3
embryonic facial prominence
3
germinal center
3
inferior parietal cortex
3
leg bone
3
medulla oblongata
3
pons
3
skin of body
3
suprapubic skin
2
muscle of leg
2
blood
2
breast carcinoma
2
chorion
2
cortex of kidney
2
endometrium cancer
2
first pancreatic bud
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
placental basal plate
2
prefrontal cortex
2
respiratory system smooth muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
Life stage
3
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
accessible chromatin
Showing 4 of 4 results
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Download
FileSet
DSR007RNE
released
Annotation file set
: Candidate regulatory elements for BSS01677 superior temporal gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR203YTP
released
Annotation file set
: Target gene predictions for BSS01677 superior temporal gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR672ATI
released
Annotation file set
: Chromatin states for BSS01677 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR868TQQ
released
Annotation file set
: Histone modifications annotation for Neural Gyrus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP