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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
0
tissue
Biosample term
65
heart
63
stomach
58
kidney
53
brain
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
adrenal gland
42
large intestine
41
muscle of back
39
left lung
34
retina
34
right lung
34
thymus
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
liver
27
left kidney
26
spinal cord
23
heart left ventricle
23
spleen
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
18
K562
16
adipose tissue
16
sigmoid colon
14
HepG2
13
gastrocnemius medialis
13
pancreas
13
upper lobe of left lung
12
neuroblastoma cell
12
psoas muscle
12
testis
12
thyroid gland
12
tibial nerve
11
Peyer's patch
11
body of pancreas
11
caudate nucleus
11
chorionic villus
11
heart right ventricle
11
ovary
11
transverse colon
10
EndoC_BH1
10
Rhabdomyosarcoma
10
endocrine pancreas
10
gastric cancer cell
10
islet of Langerhans
10
layer of hippocampus
10
muscle of trunk
10
skeletal muscle tissue
10
temporal lobe
9
HeLa-S3
9
coronary artery
9
liposarcoma
9
prostate gland
9
substantia nigra
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
ascending aorta
8
breast epithelium
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
tibial artery
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
HL-60
7
IMR-90
7
NAMALWA cell
7
SK-N-MC
7
SK-N-SH
7
angular gyrus
7
aorta
7
cerebellum
7
colonic mucosa
7
diffuse intrinsic pontine glioma
7
duodenal mucosa
7
esophagus muscularis mucosa
7
fibroblast cell line
7
left renal pelvis
7
omental fat pad
7
right renal pelvis
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19240
6
GM23248
6
H1-hESC
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY7
6
PC-3
6
PC-9
6
RPMI8226
6
RWPE1
6
Rh-4 cell
6
SW480
6
WERI-Rb-1
6
WI38
6
acute myeloid leukemia
6
cingulate gyrus
6
globus pallidus
6
lower leg skin
6
midbrain
6
right atrium auricular region
6
right renal cortex interstitium
6
thoracic aorta
6
trophoblast
5
Ammon's horn
5
Chondroid Chordoma
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
RS4-11 cell
5
SJSA1
5
T47D
5
chorion membrane
5
endometrium adenocarcinoma
5
esophageal adenocarcinoma
5
esophagus
5
immortal human breast epithelial cell line cell
5
limb
5
lymphoblastoid cell line
5
muscle layer of duodenum
5
parathyroid adenoma
5
prostate cancer cell line
5
putamen
5
stomach smooth muscle
5
urinary bladder
4
A172
4
ACHN
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
H4
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
L1-S8
4
M059J
4
Mantle cell lymphoma
4
NB4
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
4
RCC 7860
4
RKO
4
RPMI7951
4
SAEC
4
SK-MEL-5
4
SK-N-SH_RA
4
T-47D cell
4
U-266 cell
4
U2OS
Disease term
2
renal cell adenocarcinoma
Organ
4
kidney
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR341ZDO
released
Annotation file set
: Candidate regulatory elements for BSS01474 RCC 7860 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656AIC
released
Annotation file set
: Chromatin states for BSS01474 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722TFK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RCC 7860
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR199VQC
released
Annotation file set
: Accessible chromatin annotation for Kidney RCC 7860 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP