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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
1
eQTL
1
gene expression
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
2
RNA-seq
Available data
bed bed3+
3
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
brain
21
stomach
18
lung
17
liver
16
adrenal gland
16
muscle of arm
16
small intestine
15
muscle of leg
15
placenta
14
subcutaneous adipose tissue
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
body of pancreas
10
caudate nucleus
10
heart left ventricle
9
cerebellum
9
coronary artery
9
frontal cortex
9
left kidney
9
omental fat pad
9
putamen
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
ascending aorta
8
spinal cord
8
spleen
6
Ammon's horn
6
amygdala
6
anterior cingulate cortex
6
heart right ventricle
6
hypothalamus
6
nucleus accumbens
6
ovary
6
right lobe of liver
6
skeletal muscle tissue
5
C1 segment of cervical spinal cord
5
aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
4
angular gyrus
4
bone tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
psoas muscle
4
right cardiac atrium
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
Peyer's patch
3
chorion membrane
3
esophagus
3
esophagus muscularis mucosa
3
left renal cortex interstitium
3
pancreas
3
prostate gland
3
right renal cortex interstitium
3
thoracic aorta
3
upper lobe of left lung
3
uterus
2
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
2
left cardiac atrium
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
minor salivary gland
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
pons
2
right renal pelvis
2
stomach smooth muscle
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
1
Pancreatic islets
1
abdominal aorta artery
1
amnion
1
aorta wall
1
aortic valve
1
arm bone
1
bladder
1
breast
1
breast - mammary tissue
1
cerebellar cortex
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
diencephalon
1
embryonic facial prominence
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fallopian tube
1
femur
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
leg bone
1
metanephros
1
mitral valve
1
mucosa of stomach
1
parietal lobe
1
pituitary
1
pituitary gland
1
prostate
1
pulmonary valve
1
rectum smooth muscle tissue
1
renal glomerulus
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
thyroid
1
tricuspid valve
1
umbilical cord
1
whole blood
Organ
5
gonad
5
testis
Life stage
3
adult
1
embryonic
Date released
3
September, 2022
1
January, 2022
1
March, 2024
Software used
3
chromhmm
1
qTLtools
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
award.project!
ITG
Showing 5 of 5 results
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Download
FileSet
DSR562FVN
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Testis.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR845ZVQ
released
Annotation file set
: Chromatin states for BSS01719 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR211VUO
released
Annotation file set
: Chromatin states for BSS01718 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR666MOR
released
Annotation file set
: Chromatin states for BSS01715 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823HJA
released
Annotation file set
: testis eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP